PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00089998001
Common NameGSBRNA2T00089998001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 218aa    MW: 23843.2 Da    PI: 6.5033
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00089998001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.26.1e-43591581100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l
  GSBRNA2T00089998001  59 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSEL 148
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +a+la+++ e
  GSBRNA2T00089998001 149 QAQLAKTQVE 158
                          *****99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.32358159IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-4259156IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MLKMEINGST STATPTASAV AVVSASETTT PVSSPSLTSS PPPSLSPQQP PQPPVVLSPC  60
AACKILRRRC AEKCVLAPYF PPTDPAKFTI AHRVFGASNI IKFLQELPES QRTDAVNSMV  120
YEAGARMRDP VYGCAGAIYH LQRQVSELQA QLAKTQVELV SMQLQRSDLL ELFYKMEQTK  180
LSAQGQQNMS FEMTNDLGFL EDTNNNNSSM SWWVPLW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00089998001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738401e-163AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614548.11e-125PREDICTED: LOB domain-containing protein 11-like
RefseqXP_013681453.11e-125PREDICTED: LOB domain-containing protein 11-like
SwissprotQ9SK081e-113LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A078FMS91e-161A0A078FMS9_BRANA; BnaC04g15690D protein
STRINGBra011942.1-P1e-119(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.13e-99LOB domain-containing protein 11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]